Credit-Only Payment Runs in Batchly

Credit-Only Payment Runs in Batchly

Overview

A credit-only payment run happens when selected bills are fully covered by available supplier credit notes in Xero.

In this case, Batchly can allocate the supplier credit notes to the selected bills without creating a cash payment for those bills.

This is useful when a supplier has outstanding credit notes that should be applied before making another payment.

What is a credit-only payment run?

A credit-only payment run means the selected bills are settled using supplier credit notes instead of a bank payment.

This can happen when:

  • A supplier has available authorised credit notes in Xero
  • The available credits are enough to fully cover the selected bill or bills
  • No remaining cash amount is required after the credits are applied
A credit-only outcome means the bill is settled in Xero, but there is no cash amount to include in the banking file for that bill.

How it works

When Batchly identifies that supplier credit notes fully cover a selected bill:

  • Batchly applies the available credit notes to the bill in Xero
  • The bill balance is reduced by the credit note allocation
  • No cash payment is created for that bill
  • The bill is settled once the credit allocation is successfully written back to Xero

Credit-only runs are especially helpful when you want to clean up supplier balances without manually applying each credit note inside Xero.

Examples

ScenarioCredit AppliedCash Payment Required
Bill amount is $1,000 and available credits are $1,000$1,000$0
Bill amount is $1,000 and available credits are $1,200$1,000$0
Bill amount is $1,000 and available credits are $600$600$400
The third example is not credit-only because there is still a remaining cash amount after the credit note is applied.

What appears in the banking file?

Credit-only bills do not create a cash payment line in the banking file.

This is because the bill is being settled by supplier credit notes, not by a bank transfer.

If your batch run contains both credit-only bills and cash-paid bills:

  • Credit-only bills are settled by credit note allocation
  • Cash-paid bills are included in the banking file
  • Only the cash amount appears in the banking file

What happens in Xero?

Batchly writes the credit note allocation back to Xero. The bill balance is reduced by the amount of the credit note allocation.

When the credit notes fully cover the bill:

  • The bill is settled in Xero
  • The supplier credit note balance is reduced
  • No payment amount is sent to the bank for that bill

You can review the credit note allocation in Xero against the relevant supplier, bill, and credit note records.

What suppliers see

If you send remittances from Batchly, the remittance helps explain which bills were included and how they were settled.

For credit-only bills, the remittance may show:

  • The bills included in the run
  • The amount settled by credit note
  • The cash payment amount, if any

This gives the supplier more context when the bill has been settled but no bank payment was made for that bill.

When to use credit-only runs

Credit-only runs are useful when:

  • A supplier has outstanding credit notes in Xero
  • You want to settle bills without making an unnecessary cash payment
  • You want to clean up supplier balances
  • You want to avoid manually applying credit notes one by one in Xero

Important notes

  • Batchly only uses credit notes that already exist in Xero
  • Credit notes must be authorised and available in Xero
  • Credit notes can only be applied to bills for the same supplier
  • Credit-only bills do not appear as cash payment lines in the banking file
  • If credits only partly cover a bill, the remaining amount may still require a cash payment
  • Credit note allocations are written back to Xero as part of the Batchly workflow

    • Related Articles

    • How Batchly Applies Supplier Credit Notes in Xero

      Overview Batchly can help apply supplier credit notes to authorised bills in Xero during a payment run. When you select bills for payment, Batchly checks whether the supplier has available authorised credit notes in Xero. If credit notes are ...
    • Why Batchly Combines Multiple Bills into One Bank Payment

      Overview If you noticed that multiple bills became one payment in your banking file or ABA file, this is expected behaviour in Batchly. Here’s why. When generating a banking file (including ABA files for Australian banks), Batchly automatically ...
    • View and Export Batch Payment Reports in Batchly

      Batchly automatically generates a Batch Payment Report at the end of each completed payment run. This report provides a clear audit trail of all bills processed, payments created in Xero, and remittances sent to suppliers. If you need to review ...
    • How to Log In and Connect Xero to Batchly

      Batchly connects directly with your Xero organisation so you can sync approved bills, generate banking files, and manage high-volume supplier payments. This guide explains how to log in and connect Xero to Batchly for the first time. Step 1: Go to ...
    • How to Mark Bills as Paid in Batchly

      How to Mark Bills as Paid in Batchly After your bank processes your banking file (for example, an ABA file in Australia), use Mark as Paid to record those payments in Xero. This step creates the batch payment in Xero and updates each included bill ...